Pinned Repositories
bamdst
a lightweight bam file depth statistical tool
bcfr
Bin-map Constructer For RILs
biocode
Bioinformatics code libraries and scripts
bwa-mem2
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
Dxy
Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
genomics
Scripts, utilities and programs for genomic bioinformatics.
GetOrganelle
Get organelle genomes from genome skimming data
idep
Integrated Differential Expression and Pathway analysis
MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
hugang123's Repositories
hugang123/Dxy
Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
hugang123/bwa-mem2
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
hugang123/QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
hugang123/bamdst
a lightweight bam file depth statistical tool
hugang123/bcfr
Bin-map Constructer For RILs
hugang123/biocode
Bioinformatics code libraries and scripts
hugang123/genomics
Scripts, utilities and programs for genomic bioinformatics.
hugang123/GetOrganelle
Get organelle genomes from genome skimming data
hugang123/idep
Integrated Differential Expression and Pathway analysis
hugang123/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
hugang123/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
hugang123/NGS-analysis
二代测序数据分析
hugang123/ngs-tools
python program for bioinformatics
hugang123/NOVOPlasty
NOVOPlasty - The organelle assembler and heteroplasmy caller
hugang123/one-python-craftsman
"One Python Craftsman" is a collection of articles on how to write better python codes.
hugang123/Python
All Algorithms implemented in Python
hugang123/python-scripts
because i'm tired of gists
hugang123/ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
hugang123/snakemake-workflows
An experimental repo for common snakemake rules and workflows
hugang123/SNPbinner
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
hugang123/SOAPgaea
hugang123/SOAPnuke2
a fast fastq files process tool