hughcross

2018-08-24-otago

2019-11-14-otago

2021-obss-day4

bioconda-recipes

Conda recipes for the bioconda channel.

bluehead_methylome_bioinformatics

cp_microsatellites

Detailed pipelines for research paper on NGS sequencing of chloroplast microsatellites

genbanking

A collection of scripts to parse and store information from genbank files

microbiome_capture

For all scripts and workflows for whole genome capture of TB and other microbes

reference_database_creator_pypi

creating reference databases for amplicon sequencing

seq_tools

some simple python scripts for bioinformatics

hughcross/genbanking

A collection of scripts to parse and store information from genbank files

hughcross/microbiome_capture

For all scripts and workflows for whole genome capture of TB and other microbes

hughcross/reference_database_creator_pypi

creating reference databases for amplicon sequencing

hughcross/seq_tools

some simple python scripts for bioinformatics

hughcross/2018-08-24-otago

hughcross/2019-11-14-otago

hughcross/2021-obss-day4

hughcross/bioconda-recipes

Conda recipes for the bioconda channel.

hughcross/bluehead_methylome_bioinformatics

hughcross/cp_microsatellites

Detailed pipelines for research paper on NGS sequencing of chloroplast microsatellites

hughcross/CSAMA

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

hughcross/cv

Source code for making a CV with Pagedown R package

hughcross/DeDup

A merged read deduplication tool capable to perform merged read deduplication on single end data.

hughcross/hugh.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

hughcross/hughcross.github.io

github page

hughcross/ipyrad

Interactive assembly and analysis of RAD-seq data sets

hughcross/megahit

Ultra-fast and memory-efficient (meta-)genome assembler

hughcross/meta_tools

hughcross/metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

hughcross/NEON-Data-Skills

Self-paced tutorials that review key data literacy concepts and data analysis skills. Published materials can be found at:

hughcross/organization-genomics

hughcross/otagocarpentries.github.io

hughcross/passive_filtration_pipeline

The bioinformatic steps used to process sequence data for the Passive filtration paper

hughcross/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

hughcross/sunbeam

A robust, extensible metagenomics pipeline

hughcross/testRel

hughcross/tutorials