Pinned Repositories
2018-08-24-otago
2019-11-14-otago
2021-obss-day4
bioconda-recipes
Conda recipes for the bioconda channel.
bluehead_methylome_bioinformatics
cp_microsatellites
Detailed pipelines for research paper on NGS sequencing of chloroplast microsatellites
genbanking
A collection of scripts to parse and store information from genbank files
microbiome_capture
For all scripts and workflows for whole genome capture of TB and other microbes
reference_database_creator_pypi
creating reference databases for amplicon sequencing
seq_tools
some simple python scripts for bioinformatics
hughcross's Repositories
hughcross/genbanking
A collection of scripts to parse and store information from genbank files
hughcross/microbiome_capture
For all scripts and workflows for whole genome capture of TB and other microbes
hughcross/reference_database_creator_pypi
creating reference databases for amplicon sequencing
hughcross/seq_tools
some simple python scripts for bioinformatics
hughcross/2018-08-24-otago
hughcross/2019-11-14-otago
hughcross/2021-obss-day4
hughcross/bioconda-recipes
Conda recipes for the bioconda channel.
hughcross/bluehead_methylome_bioinformatics
hughcross/cp_microsatellites
Detailed pipelines for research paper on NGS sequencing of chloroplast microsatellites
hughcross/CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
hughcross/cv
Source code for making a CV with Pagedown R package
hughcross/DeDup
A merged read deduplication tool capable to perform merged read deduplication on single end data.
hughcross/hugh.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
hughcross/hughcross.github.io
github page
hughcross/ipyrad
Interactive assembly and analysis of RAD-seq data sets
hughcross/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
hughcross/meta_tools
hughcross/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
hughcross/NEON-Data-Skills
Self-paced tutorials that review key data literacy concepts and data analysis skills. Published materials can be found at:
hughcross/organization-genomics
hughcross/otagocarpentries.github.io
hughcross/passive_filtration_pipeline
The bioinformatic steps used to process sequence data for the Passive filtration paper
hughcross/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
hughcross/sunbeam
A robust, extensible metagenomics pipeline
hughcross/testRel
hughcross/tutorials