hugheylab/pmparser

Issues

• Include PubMed article topics that are MeSH Supplementary Concept Records

  #89 opened 6 months ago by dhimmel
  1

• Deduplicate entries in `pub_type` table

  #91 opened 5 months ago by nicklamiller
  0

• Clean up MeSH indexing method values

  #90 opened 6 months ago by dhimmel
  2

• Failure with dev xml2

  #88 opened a year ago by hadley
  3

• lintr found issues with code

  #85 opened a year ago by github-actions
  0

• Abstract(s) missing for publication

  #87 opened a year ago by KimBenjaminTang
  2

• Monthly PMDB Updates on Zenodo discontinued?

  #86 opened a year ago by KimBenjaminTang
  3

• Missing BQ tables?

  #84 opened 2 years ago by ravwojdyla
  3

• lintr found issues with code

  #83 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #79 opened 2 years ago by github-actions
  0

• Support duckdb for fast analysis

  #82 opened 2 years ago by hope-data-science
  1

• Any solutions if the `modifyPubmedDb` process breaks?

  #81 opened 2 years ago by hope-data-science
  3

• A small question about the log file

  #80 opened 2 years ago by hope-data-science
  1

• lintr found issues with code

  #78 opened 2 years ago by github-actions
  0

• Missing OtherAbstract

  #71 opened 2 years ago by alinangle
  4

• Missing titles in the article table

  #76 opened 2 years ago by KimBenjaminTang
  2

• lintr found issues with code

  #77 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #75 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #74 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #73 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #70 opened 2 years ago by github-actions
  0

• lintr found issues with code

  #69 opened 2 years ago by github-actions
  0

• xml_filename column in pmid_status table created as varchar(1)

  #68 opened 2 years ago by jcalebsmith
  3

• pub_date column empty in article table

  #67 opened 2 years ago by KimBenjaminTang
  2

• Support PubMed IDs for NCBI Bookshelf records

  #66 opened 3 years ago by dhimmel
  7

• lintr found issues with code

  #65 opened 3 years ago by github-actions
  0

• lintr found issues with code

  #64 opened 3 years ago by github-actions
  0

• Update schedule?

  #53 opened 3 years ago by ravwojdyla
  8

• lintr found issues with code

  #62 opened 3 years ago by github-actions
  0

• lintr found issues with code

  #61 opened 3 years ago by github-actions
  0

• lintr found issues with code

  #60 opened 3 years ago by github-actions
  0

• lintr found issues with code

  #59 opened 3 years ago by github-actions
  0

• lintr found issues with code

  #58 opened 3 years ago by jakejh
  0

• lintr found issues with code

  #57 opened 3 years ago by JSchoenbachler
  0

• lintr found issues with code

  #56 opened 3 years ago by JSchoenbachler
  0

• lintr found issues with code

  #55 opened 3 years ago by JSchoenbachler
  0

• lintr found issues with code

  #54 opened 3 years ago by github-actions
  0

• journal.pub_year empty

  #50 opened 3 years ago by globbestael
  2

• Order of AbstractText elements in abstract table

  #51 opened 3 years ago by globbestael
  3

• Indexes

  #49 opened 3 years ago by globbestael
  4

• PMDB stopped releasing new versions

  #48 opened 3 years ago by sitch
  2

• Compatibility with Clickhouse

  #33 opened 3 years ago by jakejh
  5

• R-cmd-check failing on Windows

  #46 opened 3 years ago by JSchoenbachler
  1

• checking for connection class

  #37 opened 4 years ago by jakejh
  1

• citation tests

  #29 opened 4 years ago by jakejh
  6

• remove unnecessary variables and arguments

  #30 opened 4 years ago by jakejh
  2

• Make separate folder for empty table outputs

  #24 opened 4 years ago by jakejh
  1

• remove check.attributes

  #25 opened 4 years ago by jakejh
  1

• remove registerDoSEQ

  #26 opened 4 years ago by jakejh
  1

• use DBI's API

  #27 opened 4 years ago by jakejh
  2