hugheylab/simphony

R package for simulating rhythmic data

simphony

simphony simulates large-scale, rhythmic data, including transcriptome data and behavioral activity data. For technical details on how we designed and validated simphony, check out the paper and the accompanying results.

Installation

Option 1: CRAN

install.packages('simphony')

Option 2: Hughey Lab Drat Repository

1. Install BiocManager.

   if (!requireNamespace('BiocManager', quietly = TRUE))
     install.packages('BiocManager')

2. If you use RStudio, go to Tools → Global Options... → Packages → Add... (under Secondary repositories), then enter:

   • Name: hugheylab
   • Url: https://hugheylab.github.io/drat/

   You only have to do this once. Then you can install or update the package by entering:

   BiocManager::install('simphony')

   Alternatively, you can install or update the package by entering:

   BiocManager::install('simphony', site_repository = 'https://hugheylab.github.io/drat/')

Usage

For an introduction to the package, read the introductory vignette. To explore more of simphony's capabilities, check out the example vignette. For more details, check out the reference documentation.