/rfscore

Primary LanguagePythonMIT LicenseMIT

rfscore

forked from https://bitbucket.org/aschreyer/rfscore

other references

  • Pedro J. Ballester and John B. O. Mitchell. A machine learning approach to predicting protein-ligand binding affinity with applications to molecular docking. Bioinformatics, 26(9):1169-1175, 2010. DOI: 10.1093/bioinformatics/btq112 https://github.com/HongjianLi/RF-Score

  • Xue L, Rodrigues J, Kastritis P, Bonvin A.M.J.J, Vangone A.: PRODIGY: a web server for predicting the binding affinity of protein-protein complexes. Bioinformatics (2016) link

  • Anna Vangone and Alexandre M.J.J. Bonvin: Contacts-based prediction of binding affinity in protein-protein complexes. eLife, e07454 (2015) link

    https://github.com/haddocking/binding_affinity

    A structure-based benchmark for protein–protein binding affinity [link] (http://onlinelibrary.wiley.com/doi/10.1002/pro.580/pdf) (144 protein-protein complexes data)