Pinned Repositories
hukai916's Repositories
hukai916/scATACpipe
hukai916/Singularity_recipe_collection
hukai916/ChIPpeakAnno
hukai916/Dockerfile_collection
hukai916/UMMS
hukai916/urlpipe
hukai916/blog_dev
My clone repository
hukai916/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
hukai916/CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
hukai916/DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
hukai916/enrichR
An R interface to enrichR
hukai916/Gotcha
Pipeline for processing of GoT-ChA genotyping data and downstream analysis
hukai916/haikus-for-codespaces
hukai916/hits
utilities for processing high-throughput sequencing experiments
hukai916/knock-knock
toolkit for analyzing genome editing experiments
hukai916/mastering_R
hukai916/MosaicForecast
A mosaic detecting software based on phasing and random forest
hukai916/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
hukai916/nextflow_learn
hukai916/OneStopRNAseq_Rui
hukai916/REDseq
hukai916/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
hukai916/RNAseq_utils
hukai916/scutls
hukai916/sikiclass
hukai916/skills-github-pages
My clone repository
hukai916/smit
hukai916/StepReg
hukai916/URLpipe_example
hukai916/wf-human-variation