humburg/pirates

Issues

• Beware of consensus sequences with many underlying differences

  #12 opened 8 years ago by humburg
  1

• Ensure read names in output file are compatible with downstream tools

  #4 opened 8 years ago by humburg
  0

• Use 1-based index for sequence diffs

  #11 opened 8 years ago by humburg
  0

• Unit tests are too slow

  #28 opened 8 years ago by humburg
  0

• Support python 2 and 3

  #7 opened 8 years ago by humburg
  2

• Merge singletons into larger clusters

  #8 opened 8 years ago by humburg
  2

• Tolerate errors in UIDs during initial consensus calling

  #20 opened 8 years ago by humburg
  0

• Sort diff by position

  #10 opened 8 years ago by humburg
  1

• Set-up continuous integration

  #5 opened 8 years ago by humburg
  0

• Unit tests and code coverage integration

  #6 opened 8 years ago by humburg
  0

• Create command-line interface

  #2 opened 8 years ago by humburg
  0

• Create python package

  #1 opened 8 years ago by humburg
  1

• Create user guide

  #17 opened 8 years ago by humburg
  0

• Add documentation

  #13 opened 8 years ago by humburg
  0

• Name for python package

  #16 opened 8 years ago by humburg
  3

• Provide guidance for contributers

  #14 opened 8 years ago by humburg
  0

• Use quality scores when computing difference between sequences

  #9 opened 8 years ago by humburg
  0

• Use binary sequence encoding

  #3 opened 8 years ago by humburg
  0