hurrialice
"I slept and dreamt that life was joy. I awoke and saw that life was service. I acted and behold, service was joy."
Illumina, Inc
Pinned Repositories
igv_gdc_buddy
stream & update gdc signed url to IGV
igv_remote
A Python interface for interacting with IGV desktop over a port using IGV batch commands
b_affy
[depreciated] Bayesian-network analysis of microarry data
cs109
hurrialice.github.io
A minimalist Jekyll theme for running a personal blog
metnet
bicolored network for mRNA and m6A sites
qutils
gist indices to bioinformatics-related scripts
uncertainties
AM207 project: dissect aleatoric and epistemic uncertainty
hurrialice's Repositories
hurrialice/uncertainties
AM207 project: dissect aleatoric and epistemic uncertainty
hurrialice/b_affy
[depreciated] Bayesian-network analysis of microarry data
hurrialice/hurrialice.github.io
A minimalist Jekyll theme for running a personal blog
hurrialice/metnet
bicolored network for mRNA and m6A sites
hurrialice/cs109
hurrialice/cs181-s17-homeworks
hurrialice/efficientR
Efficient R programming: a book
hurrialice/faply
faster plyr::aaply function
hurrialice/lendingClub
Machine learning practices: Should a loan be accepted? Check this:
hurrialice/qutils
gist indices to bioinformatics-related scripts
hurrialice/bai-indexer
Build an index for your BAM Index (BAI)
hurrialice/Canopy
Python package canopy loads the SomaLogic, Inc. proprietary data file called an *.adat. The package provides auxiliary functions for extracting relevant information from the ADAT object once in the Python environment. Basic familiarity with the Python environment is assumed, as is the ability to install contributed packages from the Python Package Installer (pip)
hurrialice/CApy
Cancer Analysis tools in Python
hurrialice/cs181-lectures
hurrialice/deTiN
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
hurrialice/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
hurrialice/getzlab-LNP
Log-normal-Poisson regression model from Hess et al. 2019
hurrialice/getzlab-SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
hurrialice/igv_remote
A Python interface for interacting with IGV desktop over a port using IGV batch commands
hurrialice/kinship2
Pedigree creation, plotting, and analytics
hurrialice/poibin
Poisson Binomial Probability Distribution for Python
hurrialice/SCANVIS
SCANVIS - a toolkit for SCoring, ANnotating and VISualizing splice junctions
hurrialice/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
hurrialice/what
Pytorch implementation of "What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision?"