Ecolime contains all the information and building scripts required to construct a ME-model for E. coli K-12 MG1655, iLE168-ME using COBRAme
- clone the repository
- run
python setup.py develop --user
- Run build_ME_model.py or build_ME_model.ipynb to construct and save iLE1678-ME
- The saved model can be solved using solve_demo.ipynb
codon table source: http://openwetware.org/wiki/Escherichia_coli/Codon_usage