/ecolime-1

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Ecolime

Ecolime contains all the information and building scripts required to construct a ME-model for E. coli K-12 MG1655, iLE168-ME using COBRAme

Installation

  1. clone the repository
  2. run python setup.py develop --user
  3. Run build_ME_model.py or build_ME_model.ipynb to construct and save iLE1678-ME
  4. The saved model can be solved using solve_demo.ipynb

codon table source: http://openwetware.org/wiki/Escherichia_coli/Codon_usage