Pinned Repositories
cfDNA
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
cfDNAPro
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
CNsignatures
This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).
cover-letter-latex
A cover letter template for a journal paper submission in Latex
cv
Guangchuang Yu's CV
data_analysis_visualization
Perl,R, mySQL scripts written for handling large-scale nucleotide data and clinical records
delfi_scripts
docs-cfdnapro
docs file for cfDNAPro R package
ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
hw538's Repositories
hw538/cfDNAPro
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
hw538/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
hw538/cfDNA
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
hw538/CNsignatures
This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).
hw538/cover-letter-latex
A cover letter template for a journal paper submission in Latex
hw538/cv
Guangchuang Yu's CV
hw538/data_analysis_visualization
Perl,R, mySQL scripts written for handling large-scale nucleotide data and clinical records
hw538/delfi_scripts
hw538/docs-cfdnapro
docs file for cfDNAPro R package
hw538/hw538.github.io
Personal Webpage
hw538/latex-response-reviewers
Response to reviewers LaTeX template
hw538/latex_paper_template
An Overleaf template for an initial journal submission and a preprint
hw538/phd-thesis-template
A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
hw538/reproduce_lucas_wflow
hw538/rslurm
Submit R code to a Slurm cluster
hw538/tcga
Microbial analysis in TCGA data
hw538/TranscriptionFactorProfiling
Profiling of transcription factor binding sites in cell-free DNA