Pinned Repositories
CN_Learn
CN-Learn
hosts
镜像：https://coding.net/u/scaffrey/p/hosts/git
pophelper
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
Python-100-Days
Python - 100天从新手到大师
2022-pangenome-graphs-intro
afconverge
Alignment-free phylogenetic method for characterizing regulatory motif adaptations underlying phenotypic convergence
alphafold
Open source code for AlphaFold.
alphafold3
AlphaFold 3 inference pipeline.
assembly-stats
Assembly statistic visualisation
biocode
Bioinformatics code libraries and scripts
hyBio's Repositories
hyBio/2022-pangenome-graphs-intro
hyBio/afconverge
Alignment-free phylogenetic method for characterizing regulatory motif adaptations underlying phenotypic convergence
hyBio/alphafold
Open source code for AlphaFold.
hyBio/alphafold3
AlphaFold 3 inference pipeline.
hyBio/assembly-stats
Assembly statistic visualisation
hyBio/biocode
Bioinformatics code libraries and scripts
hyBio/caastools
CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
hyBio/cactus
The Minigraph-Cactus Pangenome Pipeline
hyBio/ClusterGVis
One-step to Cluster and Visualize Gene Expression Matrix
hyBio/constellatoR
R package constellatoR to check functional convergence in long lists of Gene Ontology terms and orthogroups
hyBio/datamapplot
Creating beautiful plots of data maps
hyBio/DeepPBS
Geometric deep learning of protein–DNA binding specificity
hyBio/evo
Biological foundation modeling from molecular to genome scale
hyBio/Genomic_tools
Genomic related tools
hyBio/genomics_general
General tools for genomic analyses.
hyBio/graphtyper
Population-scale genotyping using pangenome graphs
hyBio/HiC_tools
A collection of tools for Hi-C data analysis
hyBio/INC-tutorial
hyBio/mapmixture
An R package and web app for spatial visualisation of admixture on a projected map
hyBio/neural-admixture
Rapid population clustering with autoencoders
hyBio/panpop
Application of pan-genome for population
hyBio/pcoc
Convergent substitution detection tool based on the PCOC model
hyBio/pggb
the pangenome graph builder
hyBio/phangorn
Phylogenetic analysis in R
hyBio/RERconverge
Analysis of convergence between organismal traits and DNA/protein sequences
hyBio/RoseTTAFold-All-Atom
RoseTTAFold-All-Atom
hyBio/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
hyBio/seqwish
alignment to variation graph inducer
hyBio/Tcbf
A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
hyBio/TGG
tomato graph pangenome