find gap in genome fasta
creat Telomere in chromsome start and end
split scaf and chromsome Fasta to contig by remove N
bash commond to merge sv result of smartie and sniff
usage: formatTable.py [-h] [-b] [-f] [-ft] [--bc [...]] [--fc [...]] [--exc]
RunCmd : Funciton: use a table split file to handle fasta && table files Writer : Minghui Meng hyacinlee@163.com
1) Extract or Except saome line by mutiple-col number
./formatTable.py -b bait.table -f fish.table
./formatTable.py -b bait.table -f fish.table --bc 1,2 --fc 2,3 --except
optional arguments: -h, --help show this help message and exit -b table split bait file (default: None) -f fish file (default: None) -ft type of fish file (default: table) --bc [ ...] set bait file columns,suppose like 1,2,3 (default: [1]) --fc [ ...] set fish file columns,suppose like 2,3,4 (default: [1]) --exc except bait lines (default: False)