polyA
polyA seq tool
To make this program work, you need to create a folder that contains the following files:
- A reference genome file, in the format .fa
- A copy of the reference genome with the following format .fai
- A file in the format .bed that conatins information about Poly-A sites.
This program takes in 5 inputs.
1.The first parameter is the location of the reference Genome on the hard drive.
Example:
"/home/reynaldo/Documents/hg19_ref_genome_nonrandom_sorted.fa"
2.The second parameter is the location of the Poly-A sites file on the hard drive.
Example:
"/home/reynaldo/Documents/GSM747470_human_brain.sites.clustered.hg19.bed"