/polyA

polyA seq tool

Primary LanguageJava

polyA

polyA seq tool

To make this program work, you need to create a folder that contains the following files:

  1. A reference genome file, in the format .fa
  2. A copy of the reference genome with the following format .fai
  3. A file in the format .bed that conatins information about Poly-A sites.

This program takes in 5 inputs.

1.The first parameter is the location of the reference Genome on the hard drive.

Example:

	"/home/reynaldo/Documents/hg19_ref_genome_nonrandom_sorted.fa"

2.The second parameter is the location of the Poly-A sites file on the hard drive.

Example:

"/home/reynaldo/Documents/GSM747470_human_brain.sites.clustered.hg19.bed"