iainrb
Scientific associate, focused on bioinformatics analysis and infrastructure for cancer research.
Ontario Institute for Cancer Research @oicr-gsi Toronto, Ontario, Canada
Pinned Repositories
arriba
Fast and accurate gene fusion detection from RNA-Seq data
gendermix
Gender inference from genotype array data by mixture model
genotyping
Components of the WTSI genotype analysis pipeline.
Gftools
A set of utilities to handle individual-level genotype data files
plinktools
Process Plink genotyping files in Python
zCall
A Rare Variant Caller for Array-based Genotyping
bam-qc-metrics
Metrics for BAM file QC
bamQC
Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)
djerba
Create cancer bioinformatics reports from metadata and workflow output
sarsCoV2Analysis
Classify samples as being either SARS-CoV-2 positive or negative, identify the strain of virus, and produce statistics about the mapping.
iainrb's Repositories
iainrb/genotyping
Components of the WTSI genotype analysis pipeline.
iainrb/plinktools
Process Plink genotyping files in Python
iainrb/zCall
A Rare Variant Caller for Array-based Genotyping
iainrb/arriba
Fast and accurate gene fusion detection from RNA-Seq data
iainrb/gendermix
Gender inference from genotype array data by mixture model
iainrb/Gftools
A set of utilities to handle individual-level genotype data files
iainrb/illumina2bam
iainrb/irods_rmq_demo
Scripts to demonstrate RabbitMQ messaging for Publisher and iRODS classes, in the updated perl-irods-wrap.
iainrb/ml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systems
iainrb/npg_irods
Tools for managing HTS (BAM and CRAM) format files in iRODS.
iainrb/npg_qc
QC checks and metrics for Illumina NGS data
iainrb/oicr_vcf
OICR programming exercise
iainrb/pb_calibration
Filter and calibration programs for Illumina BAM files
iainrb/Percolate
A parallel workflow management application.
iainrb/perl-dnap-utilities
WTSI DNA Pipelines Perl Utility Library
iainrb/perl-irods-wrap
Perl iRODS Client Wrapper Library
iainrb/pyprofex
Python Profiling Extender: Parse output from the Python cProfile module
iainrb/simtools
Program to create and process SIM files
iainrb/unified_warehouse