vcf2tsv errors
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iamgiddyaboutgit commented
It wrote some data, but gave this error.
vcf_info_data.append(",".join(str(n) for n in variant_info.get(info_field)))
TypeError: 'NoneType' object is not iterable
I don't know if it is related to this error, but I think that some of the data types that the tool puts in the output tsv don't make sense.
iamgiddyaboutgit commented
Decided to use gatk VariantsToTable instead.