iamgiddyaboutgit/gnn_for_diabetes

Issues

• Decide on Fields wanted in VCFs

  #8 opened 2 years ago by iamgiddyaboutgit
  1

• Decide on plugins that we want VEP to use.

  #18 opened 2 years ago by iamgiddyaboutgit
  1

• Can a region-separated GVCF be annotated by VEP?

  #14 opened 2 years ago by iamgiddyaboutgit
  2

• Understand Captum.ai better and how we want to utilize it.

  #15 opened 2 years ago by iamgiddyaboutgit
  3

• Decide on Tool to Annotate VCFs

  #4 opened 2 years ago by iamgiddyaboutgit
  4

• How can a GNN be trained?

  #16 opened 2 years ago by iamgiddyaboutgit
  4

• Regenerate custom_genes.bed

  #17 opened 2 years ago by iamgiddyaboutgit
  0

• Get list of genetic loci to include in graphs

  #2 opened 2 years ago by iamgiddyaboutgit
  2

• Write .tsv processing script

  #12 opened 2 years ago by iamgiddyaboutgit
  3

• Does vcf_to_tsv.bash work on GVCFs separated by genomic region?

  #13 opened 2 years ago by iamgiddyaboutgit
  0

• Write script to sort .bed

  #11 opened 2 years ago by iamgiddyaboutgit
  1

• vcf2tsv errors

  #10 opened 2 years ago by iamgiddyaboutgit
  1

• What will the .tsv files look like that hold the data?

  #9 opened 2 years ago by iamgiddyaboutgit
  2

• Link 1000 Genomes Sample Ids to Ethnicities

  #7 opened 2 years ago by iamgiddyaboutgit
  0

• What are the steps to install the VEP command line tool?

  #5 opened 2 years ago by iamgiddyaboutgit
  2

• What version of the human ref. genome is our data based on?

  #6 opened 2 years ago by iamgiddyaboutgit
  0

• Filter VCF

  #3 opened 2 years ago by iamgiddyaboutgit
  2

• Create README

  #1 opened 2 years ago by iamgiddyaboutgit
  0