ianyfchang

ianyfchang's Repositories

• ianyfchang/cerebro-paper

  Language:Python20

• ianyfchang/containers

  con

  Language:Shell20

• ianyfchang/DeepNovo

  Protein Identification with Deep Learning

  Language:Python10

• ianyfchang/DeepNovo-DIA

  De novo peptide sequencing for DDA and DIA by deep learning

  Language:Python10

• ianyfchang/monocle3

  Language:R00

• ianyfchang/Optimal-GBM

  Language:R

• ianyfchang/pdx_exomeseq

  Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models

  Language:HTML10

• ianyfchang/proteomics

  Language:R20

• ianyfchang/seurat-data

  Dataset distribution for Seurat

  Language:R00

• ianyfchang/seurat-wrappers

  Community-provided extensions to Seurat

  Language:R00

• ianyfchang/single-cell-rcc-pipeline

  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcinoma Associated with Clinical Outcome Identified Using Single-Cell Protein Activity Inference." Includes code for VIPER protein activity inference pipeline

  Language:HTML00

• ianyfchang/spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

  Language:HTML00

• ianyfchang/SVetect

  A tool for identifying and classifying structural rearrangements and chromoplexy from high throughput sequencing data.

  Language:Python00

• ianyfchang/TRUP

  Tumor-specimen suited RNA-seq Unified Pipeline

  Language:Perl10