Pinned Repositories
APER
Analyzing Positional Error in Reads
ARC
Assembly by Reduced Complexity (ARC)
clearcut
This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm.
GRC_Scripts
Executable R and Python scripts for the Genomics Resources Core
grcScripts2
University of Idaho Genomics Resources Core HTS Processing scripts as an R package
hitsapipe
High Throughput Sequence Analysis Pipeline
HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
SAD-BCB501-Spring2018
Analysis of various datasets for the Sequence Analysis Discussion group.
Seed
R/Shiny application for viewing microbial community data
seqyclean
Institute for Bioinformatics and Evolutionary Studies's Repositories
ibest/ARC
Assembly by Reduced Complexity (ARC)
ibest/seqyclean
ibest/Seed
R/Shiny application for viewing microbial community data
ibest/GRC_Scripts
Executable R and Python scripts for the Genomics Resources Core
ibest/SAD-BCB501-Spring2018
Analysis of various datasets for the Sequence Analysis Discussion group.
ibest/HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
ibest/clearcut
This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm.
ibest/grcScripts2
University of Idaho Genomics Resources Core HTS Processing scripts as an R package
ibest/APER
Analyzing Positional Error in Reads
ibest/hitsapipe
High Throughput Sequence Analysis Pipeline
ibest/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
ibest/Roche454QAReport
R package to produce a Quality Assurance Report for Roche 454 data
ibest/arGENt
ibest/dbcHelpers
Helper tools for pre and post dbcAmplicon runs.
ibest/evalyn
EVALYN - A evolutionary computation approach to evolving high-quality guide trees and multiple sequence alignments.
ibest/grcScriptsPy
Genomics Resources Core Python Bioinformatic Scripts
ibest/HTStream-validation
Validation and figures for HTStream
ibest/ibest.github.com
ibest/MetAmp
ibest/slopmap