Pinned Repositories
bioschemas.github.io
Files for the Bioschemas website.
extractRetroRules
Python script that extracts all the rules from the SQL dump from the retrorules.org website
handbook
knime-base
KNIME base image for IBISBA Nodes
knime-workflow-base
Base image for IBISBA Nodes
ProjectWebForm
Web interface for procedures to populate the IBISBA-HUB
RetroPath2-cwl
RetroPath2.0 IBISBA Node
rp2paths-cwl
CWL/Docker wrapping of RP2Paths
tascu_data
test-cwl
ibisba's Repositories
ibisba/knime-workflow-base
Base image for IBISBA Nodes
ibisba/knime-base
KNIME base image for IBISBA Nodes
ibisba/bioschemas.github.io
Files for the Bioschemas website.
ibisba/DBT_pipeline
All tools associated with the Design Build Test pipeline for pathway discovery through RetroPath
ibisba/extractRetroRules
Python script that extracts all the rules from the SQL dump from the retrorules.org website
ibisba/galaxy_workflow
Collection of workflow files for the Galaxy interface
ibisba/handbook
ibisba/ProjectWebForm
Web interface for procedures to populate the IBISBA-HUB
ibisba/RetroPath2-cwl
RetroPath2.0 IBISBA Node
ibisba/rp2paths-cwl
CWL/Docker wrapping of RP2Paths
ibisba/rpRanker
Python package for post-rp2paths steps including: resconstruction of full pathways, calculation of Gibbs free energy, flux balance analysis and SBML handling including IBISBA annotations
ibisba/tascu_data
ibisba/test-cwl
ibisba/bioconda-recipes
Conda recipes for the bioconda channel.
ibisba/bpmn
ibisba/galaxy_retropath2.0
ibisba/galaxy_rpRanker
Collection of tools that: complete reactions, perform FBA analysis and thermodynamics calculation of the output of RetroPath2.0
ibisba/galaxy_selenzyme
Galaxy node that queries the http://selenzyme.synbiochem.co.uk/ REST webservice
ibisba/ibisba.github.io
IBISBAHub webpages
ibisba/training