Pinned Repositories
amyloid_hydrophobicity
Data and scripts to generate the figures in the manuscript on the hydrophobic temperature dependence of amyloid fibril formation.
ComDYN
Scripts to create ComDYN 'Common Constrains Dynamics' elastic network for use with the MARTINI coarse-grained forcefield (and any other elastic network application) for when large conformational changes need to be sampled
ExtracellularVesicles
hydrophobic_patches
MA-PRALINE
Motif-Aware PRALINE: a motif-aware multiple sequence alignment tool
multi-task-PPI
pipenn
PRALINE
Next-generation PRALINE sequence alignment program.
protein-glue
Accompanying code for the ProteinGLUE method
scmra
scMRA python module
IBIVU's Repositories
ibivu/hydrophobic_patches
ibivu/pipenn
ibivu/protein-glue
Accompanying code for the ProteinGLUE method
ibivu/PRALINE
Next-generation PRALINE sequence alignment program.
ibivu/ExtracellularVesicles
ibivu/MA-PRALINE
Motif-Aware PRALINE: a motif-aware multiple sequence alignment tool
ibivu/amyloid_hydrophobicity
Data and scripts to generate the figures in the manuscript on the hydrophobic temperature dependence of amyloid fibril formation.
ibivu/scmra
scMRA python module
ibivu/ComDYN
Scripts to create ComDYN 'Common Constrains Dynamics' elastic network for use with the MARTINI coarse-grained forcefield (and any other elastic network application) for when large conformational changes need to be sampled
ibivu/FTD_PRODIA
Analysis of proteomics data of FTD subtypes
ibivu/hbp
ibivu/multi-task-PPI
ibivu/nanoplastics
ibivu/Tumor_Break_Load
ibivu/B4TM-Galaxy-2017
Everything about Galaxy assignment of B4TM: instructions, scripts, files and papers. This assignment served as an evaluation of the tutorial for metaModules Galaxy workflow.
ibivu/Docker-tool-images
ibivu/MA-PRALINE-extras
Analysis notebooks and other support code used in the MA-PRALINE article.
ibivu/metaModules-Galaxy-Workflow
A Galaxy workflow for metaModules (Ali May et al, 2016), which is a recently developed metatranscriptomics computational workflow to automate identification of key functional differences between health- and disease-associated microbiomes
ibivu/whole-genome-tool