Pinned Repositories
topodombar
Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
ExoProfiler
Analyzing transcription factor (TF) binding sites using ChIP-exo data.
cohesinKO
paralog_regulation
Co-regulation analysis of duplicated gene pairs with respect to the three-dimensional chromatin architecture as reveald by Hi-C data.
sevenC
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
sevenC_analysis
Prediction performance analysis of the sevenC package
TAD_gene_function
Analysis of common gene functions within topologically associating domains
thesis
My PhD thesis on genome folding in evolution and disease
EasyFuse
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
splice2neo
R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
ibn-salem's Repositories
ibn-salem/sevenC
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
ibn-salem/paralog_regulation
Co-regulation analysis of duplicated gene pairs with respect to the three-dimensional chromatin architecture as reveald by Hi-C data.
ibn-salem/sevenC_analysis
Prediction performance analysis of the sevenC package
ibn-salem/TAD_gene_function
Analysis of common gene functions within topologically associating domains
ibn-salem/cohesinKO
ibn-salem/genepair
Functions to Analyse Pairs of Genomic Elements like Genes.
ibn-salem/GRB_interactions
Chromatin interaction of CNEs with target and bystander genes in GRBs
ibn-salem/hyperbolic_nucleus
Analysing chromatin-chromatin interaction networks in hyperbolic space
ibn-salem/thesis
My PhD thesis on genome folding in evolution and disease
ibn-salem/Aalbi
Advanced algorithms in bioinformatics
ibn-salem/chromint
ibn-salem/demopkg
What the Package Does (One Line, Title Case)
ibn-salem/GenePairReg
ibn-salem/GutDev
ibn-salem/MLL-transloc
Analysing MLL translocations with cromatin interaction data
ibn-salem/MolNetB
ibn-salem/NGSCheckMate
Software program for checking sample matching for NGS data
ibn-salem/NumSys_Bifurcation
Numerical Systems Biology: Bifurcation talk
ibn-salem/position_effect
Prediction of Position Effects of Apparently Balanced Human Chromosome Rearrangements
ibn-salem/PPIgenomics
Analyse genomic distribution of gene pairs that encode for proteins with direct protein-protein interactinos (PPI)
ibn-salem/read_counter_HTSeq
Counts paired-end fragments from SAM/BAM files for defined input regions
ibn-salem/TAD_disease_genes
Analyis of TADs by number of disease genes and pathogenic structural variations
ibn-salem/telomere_genes