Pinned Repositories
dcc-cm
Configuration management and related automation
dcc-common
Common modules for code reuse
dcc-docs
User facing documentation for ICGC DCC at http://docs.icgc.org/
dcc-iobio
ICGC customized iobio containers for accessing ICGC cloud based files
dcc-portal
Data portal for exploring and accessing data
dcc-release
Second generation of the ICGC DCC release ETL built on Spark
dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
dcc-submission
Modules for accepting and validating project submissions
egasub
EGASub - ICGC EGA Submission CLI
jtracker
JTracker – A 'track everything' solution for workflow authoring, sharing and execution.
ICGC DCC's Repositories
icgc-dcc/dcc-portal
Data portal for exploring and accessing data
icgc-dcc/dcc-release
Second generation of the ICGC DCC release ETL built on Spark
icgc-dcc/dcc-docs
User facing documentation for ICGC DCC at http://docs.icgc.org/
icgc-dcc/dcc-cm
Configuration management and related automation
icgc-dcc/jtracker
JTracker – A 'track everything' solution for workflow authoring, sharing and execution.
icgc-dcc/dcc-iobio
ICGC customized iobio containers for accessing ICGC cloud based files
icgc-dcc/pcawg-somatic-mutation-calling
icgc-dcc/dcc-common
Common modules for code reuse
icgc-dcc/dcc-download
Modules that allow the creation, download and maintenance of large portal data sets
icgc-dcc/dcc-id
ID system for ICGC projects
icgc-dcc/dcc-import
Reference data importers
icgc-dcc/dcc-parent
Common parent pom for module configuration reuse
icgc-dcc/ega-file-transfer
icgc-dcc/icgc-legacy-dictionary
Backup of json
icgc-dcc/icgconnect
icgc-dcc/k8s
icgc-dcc/dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
icgc-dcc/bwa-mem-wgs-aligner
icgc-dcc/Daco2Ego
Utility and service to load DACO list into Ego.
icgc-dcc/dckr_song_upload
This docker image is used to upload to ICGC using SONG client during EGA transfer
icgc-dcc/ega-file-transfer-to-collab-5-jtracker
Mirror of our internal git repo: http://142.1.177.124/jt-hub/ega-file-transfer-to-collab-5-jtracker
icgc-dcc/ega-file-transfer-to-collab-jt
JTracker workflow to transfer ICGC sequencing data from EGA to Cancer Genome Collaboratory
icgc-dcc/icgc-python
Python API for accessing ICGC Data
icgc-dcc/JTrackerTransferOperations
icgc-dcc/Jukebox
:white_check_mark: Customizations for JupyterHub and Jupyter notebooks.
icgc-dcc/pcawg-variant-calling-cgc
Workflow to run PCAWG variant callers on CGC platform
icgc-dcc/pcawg2-meta
Metadata to support running PCAWG pipelines for PCAWG2 donors
icgc-dcc/retirement-notice
Static site providing notice of the data portal retirement.
icgc-dcc/sbg-tools
This is the home for reusable dockerized tools, which can be plugged into different workflows.
icgc-dcc/SongUperations