ICGC DCC

The Data Coordinating Center for the ICGC.org project

Toronto, ON, Canada

Pinned Repositories

dcc-cm
Configuration management and related automation
Language:Shell5 31 32
dcc-common
Common modules for code reuse
Language:Java1 30 02
dcc-docs
User facing documentation for ICGC DCC at http://docs.icgc.org/
Language:CSS6 27 121
dcc-iobio
ICGC customized iobio containers for accessing ICGC cloud based files
Language:JavaScript2 23 12
dcc-portal
Data portal for exploring and accessing data
Language:HTML15 23 2168
dcc-release
Second generation of the ICGC DCC release ETL built on Spark
Language:Java10 28 99
dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
Language:Java0 30 154
dcc-submission
Modules for accepting and validating project submissions
Language:Java2 31 104
egasub
EGASub - ICGC EGA Submission CLI
Language:Python5 25 152
jtracker
JTracker – A 'track everything' solution for workflow authoring, sharing and execution.
Language:Python4 5 00

ICGC DCC's Repositories

icgc-dcc/dcc-portal
Data portal for exploring and accessing data
Language:HTML15 23 2168
icgc-dcc/dcc-release
Second generation of the ICGC DCC release ETL built on Spark
Language:Java10 28 99
icgc-dcc/dcc-docs
User facing documentation for ICGC DCC at http://docs.icgc.org/
Language:CSS6 27 121
icgc-dcc/dcc-cm
Configuration management and related automation
Language:Shell5 31 32
icgc-dcc/jtracker
JTracker – A 'track everything' solution for workflow authoring, sharing and execution.
Language:Python4 5 00
icgc-dcc/dcc-iobio
ICGC customized iobio containers for accessing ICGC cloud based files
Language:JavaScript2 23 12
icgc-dcc/pcawg-somatic-mutation-calling
Language:Python2 5 3
icgc-dcc/dcc-common
Common modules for code reuse
Language:Java1 30 02
icgc-dcc/dcc-download
Modules that allow the creation, download and maintenance of large portal data sets
Language:Java1 21 22
icgc-dcc/dcc-id
ID system for ICGC projects
Language:Java1 28 75
icgc-dcc/dcc-import
Reference data importers
Language:Java1 30 14
icgc-dcc/dcc-parent
Common parent pom for module configuration reuse
1 28 03
icgc-dcc/ega-file-transfer
1 24 31
icgc-dcc/icgc-legacy-dictionary
Backup of json
Language:Roff1 3 0
icgc-dcc/icgconnect
Language:Python1 24 0
icgc-dcc/k8s
Language:HCL1 4 0
icgc-dcc/dcc-repository
Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.
Language:Java0 30 154
icgc-dcc/bwa-mem-wgs-aligner
Language:Python4 2
icgc-dcc/Daco2Ego
Utility and service to load DACO list into Ego.
Language:Python17 141
icgc-dcc/dckr_song_upload
This docker image is used to upload to ICGC using SONG client during EGA transfer
Language:Python5 0
icgc-dcc/ega-file-transfer-to-collab-4-jtracker
Mirror of our internal git repo: http://142.1.177.124/jt-hub/ega-file-transfer-to-collab-4-jtracker
23 0
icgc-dcc/ega-file-transfer-to-collab-5-jtracker
Mirror of our internal git repo: http://142.1.177.124/jt-hub/ega-file-transfer-to-collab-5-jtracker
23 0
icgc-dcc/ega-file-transfer-to-collab-jt
JTracker workflow to transfer ICGC sequencing data from EGA to Cancer Genome Collaboratory
Language:Python24 71
icgc-dcc/icgc-python
Python API for accessing ICGC Data
Language:Python24 23
icgc-dcc/JTrackerTransferOperations
Language:Python4 2
icgc-dcc/Jukebox
:white_check_mark: Customizations for JupyterHub and Jupyter notebooks.
Language:Jupyter Notebook21 6
icgc-dcc/pcawg-variant-calling-cgc
Workflow to run PCAWG variant callers on CGC platform
Language:Python5 0
icgc-dcc/pcawg2-meta
Metadata to support running PCAWG pipelines for PCAWG2 donors
5 1
icgc-dcc/sbg-tools
This is the home for reusable dockerized tools, which can be plugged into different workflows.
5 0
icgc-dcc/SongUperations
Language:Python2 0