ichaudr1

MD/PhD Student at the University of Maryland, School of Medicine

Baltimore, Maryland

Pinned Repositories

Connecto-Radiomics
A pipeline to do a radiomics informed connectomics analysis on medical image segmentations.
Language:Python00
blast_seq_filter
A versatile script for pulling BLAST results. Specifically intended to be used to pull promoter sequences of a set of proteins and filter those promoter sequences based off a set similarity threshold.
Language:Python0 3 01
control_seq_gen
Generates control sequences for motif analysis. Goal is to maintain the statistical parameters of the input sequences (i.e. nucleotide composition) without recapitulating the sites of interest.
Language:Python1 2 00
oprn_consv_calc
Aims to determine the structural conservation (i.e. gene order) of an operon within a given taxonomic clade.
Language:Python0 3 00
phylo_seq_gen
Pulls sequences of a reference gene from a set of genomes. A MSA of these sequences can be used to construct a phylogeny.
Language:Python0 2 00
soa
A pipeline for systematic operon analysis (soa) in aims to elucidate genome wide transcription regulatory networks.
Language:HTML0 6 00
hiv_polyA_struct_phylo_analysis
A pipeline to analyze the structural conservation of the 5' polyA hairpin in HIV by using a comparative genomics approach.
Language:Python0 1 00
seqcheck
A utility for checking sequencing results.
Language:Python00

ichaudr1/hiv_polyA_struct_phylo_analysis
A pipeline to analyze the structural conservation of the 5' polyA hairpin in HIV by using a comparative genomics approach.
Language:Python0 1 00
ichaudr1/seqcheck
A utility for checking sequencing results.
Language:Python00