This repository creates a CDAPS compatible functional enrichment Docker image using iQuery service
Version 0.4.0 can be directly pulled from Dockerhub with this command:
docker pull coleslawndex/cdiquerygenestoterm:0.4.0
git clone https://github.com/idekerlab/cdiquerygenestoterm
cd cdiquerygenestoterm
make dockerbuild
Run make command with no arguments to see other build/deploy options including creation of Docker image
make
Output:
clean remove all build, test, coverage and Python artifacts
clean-build remove build artifacts
clean-pyc remove Python file artifacts
clean-test remove test and coverage artifacts
lint check style with flake8
test run tests quickly with the default Python
test-all run tests on every Python version with tox
coverage check code coverage quickly with the default Python
docs generate Sphinx HTML documentation, including API docs
servedocs compile the docs watching for changes
testrelease package and upload a TEST release
release package and upload a release
dist builds source and wheel package
install install the package to the active Python's site-packages
dockerbuild build docker image and store in local repository
dockerpush push image to dockerhub
docker run -v coleslawndex/cdiquerygenestoterm:0.4.0 -h
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.