Downloads protein-protein interaction data
- Free software: MIT license
- Documentation: https://cellmaps-ppidownloader.readthedocs.io.
- Python 3.8+
git clone https://github.com/idekerlab/cellmaps_ppidownloader
cd cellmaps_ppidownloader
make dist
pip install dist/cellmaps_ppidownloader*whl
Run make command with no arguments to see other build/deploy options including creation of Docker image
make
Output:
clean remove all build, test, coverage and Python artifacts
clean-build remove build artifacts
clean-pyc remove Python file artifacts
clean-test remove test and coverage artifacts
lint check style with flake8
test run tests quickly with the default Python
test-all run tests on every Python version with tox
coverage check code coverage quickly with the default Python
docs generate Sphinx HTML documentation, including API docs
servedocs compile the docs watching for changes
testrelease package and upload a TEST release
release package and upload a release
dist builds source and wheel package
install install the package to the active Python's site-packages
dockerbuild build docker image and store in local repository
dockerpush push image to dockerhub
- bait list file: TSV file of baits used for AP-MS experiments
- edge list file: TSV file of edges for protein interaction network
- provenance: file containing provenance information about input files in JSON format (see sample provenance file in examples folder)
For information invoke cellmaps_ppidownloadercmd.py -h
Example usage
cellmaps_ppidownloadercmd.py ./cellmaps_ppidownloader_outdir --edgelist examples/edgelist.tsv --baitlist examples/baitlist.tsv --provenance examples/provenance.json
Example usage
Coming soon...
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.