Pinned Repositories
authorator
BioDIG
Biological Database of Image and Genomes
BOA
bytesizebio
Code from Byte Size Biology Blog
CAFA
cafa-format-check
Format checkers for CAFA predictions files
CAFA-sp-targets
CAFA-sp-targets
CAFA2-results
Raw results from CAFA 2
Friedberg-Lab
Scripts originating in Iddo Friedberg's lab and may be of general Interest
papertooter
A script to post manuscripts from biorxiv to Mastodon using a unique hashtag based on the manuscript DOI.
idoerg's Repositories
idoerg/cafa-format-check
Format checkers for CAFA predictions files
idoerg/CAFA-sp-targets
CAFA-sp-targets
idoerg/Friedberg-Lab
Scripts originating in Iddo Friedberg's lab and may be of general Interest
idoerg/papertooter
A script to post manuscripts from biorxiv to Mastodon using a unique hashtag based on the manuscript DOI.
idoerg/Ancestral-Blocks-Reconstruction
idoerg/Bacteriocin_paper
All the notebooks and files for the bacteriocin prediction paper
idoerg/biopython
Official git repository for Biopython (originally converted from CVS)
idoerg/CAFA-evaluator
Evaluation software of the CAFA challenge
idoerg/CAFA_assessment_tool
Precision-Recall based assessment for CAFA
idoerg/CAFA_benchmark
idoerg/CAFA_evaluation
A tool for evaluating CAFA predictions
idoerg/dblp-pub
A scraper that downloads search results from DBLP.
idoerg/dblp-python
A simple Python wrapper around the DBLP API, currently supporting author search and author and publication lookup.
idoerg/debias
idoerg/epitope_tag
Project for internal epitope tagging.
idoerg/GenomicIslandPrediction
idoerg/GOFindBias
The current main function of this project is to help people with .gaf file analysis.
idoerg/GOThresher
idoerg/idoerg.github.io
idoerg/InformationAccretion
Compute Information Accretion of ontology terms from a dataset
idoerg/jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
idoerg/kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
idoerg/NeuBI
Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
idoerg/newsletter
repo for OBF community newsletter updates
idoerg/paperchaser
A script to help with departmental or program reviews
idoerg/POEM
idoerg/POEM_py3k
POEM in python3
idoerg/pygeneweld
GeneWeld scripts in Python
idoerg/Relevant-Operon
idoerg/TRAC
Transfer learning for Antibiotic resistance gene classification