Pinned Repositories
2017-04-03-adv-r-progr-EMBL
Advanced R programming course at EMBL, 3-4 April 2017
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
bactopia
A flexible pipeline for complete analysis of bacterial genomes
BAGEP
A pipeline for Bacterial Whole genome sequence data analysis
VCF_heatmap
R script for VCF visualisation
idolawoye's Repositories
idolawoye/BAGEP
A pipeline for Bacterial Whole genome sequence data analysis
idolawoye/VCF_heatmap
R script for VCF visualisation
idolawoye/2017-04-03-adv-r-progr-EMBL
Advanced R programming course at EMBL, 3-4 April 2017
idolawoye/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
idolawoye/bactopia
A flexible pipeline for complete analysis of bacterial genomes
idolawoye/cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows
idolawoye/deepvariant
Google's DeepVariant variant caller as a Nextflow pipeline
idolawoye/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
idolawoye/docker_builds_dev
docker build dev
idolawoye/idolawoye.github.io
Personal website
idolawoye/mabs
idolawoye/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
idolawoye/nextflow
A DSL for data-driven computational pipelines
idolawoye/NGS-RNAseq-training
Hands-On training 2015
idolawoye/Nigeria-covid-19
Geospatial data for the Nigerian novel coronavirus confirmed cases. Data are manually curated from http://covid19.ncdc.gov.ng/
idolawoye/Nigeria_nextstrain
Nextstrain build for Nigerian SARS-CoV-2 genomes
idolawoye/Pointfinder
idolawoye/Primers
primers for all kinds of projects
idolawoye/python-functions-and-modules
Python3 teaching materials for functions and modules (1 day)
idolawoye/SARS-CoV-2_Multi-PCR_v1.0
SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
idolawoye/sequence-upload-to-gs
Incremental upload of Illumina sequencing runs to GS from a companion computer, or directly from Linux-based Illumina sequencers
idolawoye/shiny-examples
idolawoye/tb
Tb outbreak study built with nextstrain
idolawoye/TB-sputum
Protocol and lab notes for TB sequencing project
idolawoye/titan
Public health bioinformatics repository for WDL workflows to analyze viral genomes.
idolawoye/Treemaker
A python script that takes alignment file and builds a phylogeny tree.