idptools

A collection of tools developed by the Holehouse Lab for the analysis of protein sequence information, with an emphasis on disordered proteins

Washington University School of Medicine

Pinned Repositories

afrc
Implementation of our reference polymer model for an unfolded protein as an ideal chain
Language:Python1 1 10
dodo
DODO is a Python package for taking an AF2 structure and redesigning the IDRs to look more 'IDR like'.
Language:Python6 1 21
finches
FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
Language:Jupyter Notebook6 2 41
finches-colab
Repository for user-facing colab notebooks that use FINCHES
Language:Jupyter Notebook10
flamingo
Repo for running and analyzing simulations of IDR motifs bound to folded domains
Language:Jupyter Notebook0 3 00
goose
A python package for generating disordered sequences and disorder sequence variants.
Language:Python9 1 01
metapredict
A machine learning based protein disorder predictor.
Language:Python21 5 95
parrot
Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
Language:Python18 4 82
PIPIT
A simple package to design shuffled protein sequences to interupt function.
Language:Python0 2 00
sparrow
Next generation sequence parameter library for proteins
Language:Python26 2 34

idptools/sparrow
Next generation sequence parameter library for proteins
Language:Python26 2 34
idptools/metapredict
A machine learning based protein disorder predictor.
Language:Python21 5 95
idptools/parrot
Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
Language:Python18 4 82
idptools/goose
A python package for generating disordered sequences and disorder sequence variants.
Language:Python9 1 01
idptools/dodo
DODO is a Python package for taking an AF2 structure and redesigning the IDRs to look more 'IDR like'.
Language:Python6 1 21
idptools/finches
FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
Language:Jupyter Notebook6 2 41
idptools/afrc
Implementation of our reference polymer model for an unfolded protein as an ideal chain
Language:Python1 1 10
idptools/finches-colab
Repository for user-facing colab notebooks that use FINCHES
Language:Jupyter Notebook10
idptools/flamingo
Repo for running and analyzing simulations of IDR motifs bound to folded domains
Language:Jupyter Notebook0 3 00
idptools/PIPIT
A simple package to design shuffled protein sequences to interupt function.
Language:Python0 2 00
idptools/idpcolab
A centralized location to link various IDP-centric Google colab notebooks
Language:Jupyter Notebook