Software for the 2014 University of Waterloo iGEM team. Visit our website or our 2014 wiki page to learn more about our 2014 project, Staphylocide.
This software was mostly created by the mathematical modelling team, headed by Jama Hagi-Yusuf.
- /CRISPRi contains MATLAB models written that describe CRISPR interference, including some parameter estimation and sensitivity analysis. Learn more about our CRISPRi model on the wiki.
- /Conjugation contains our PDE and Agent Based models for conjugation. You can read more about our model formation on the wiki
- /RNAi contains MATLAB models that describe silencing RNA, including sensitivity analysis. Read more about our RNAi model on the wiki.
- /Software-CRISPRecise contains the beginnings of a software project to help choose targets for CRISPR interference, which is unfinished but may be continued next year. UESTC-Software actually finished development of something similar, though, so check out their wiki.