Pinned Repositories
BioHacks2024
A full-stack web app that uses Retrieval-Augmented Generation (RAG) to match patients with oncology clinical trials by analyzing semantic similarities in clinical trial and patient data. Built with React, Next.js, Node.js, Flask, and Python for Biohacks 2024.
Group7_FinalProject
Simulate the gene flow on different landscapes by converting landscapes into resistance surface with different cost distances. .
Blended_seq_imputation
a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing
02620_final_Automated-Cell-Phenotyping
Evaluate classic ML models (Kmeans, SVM, Logistic regression and XGboost) on three different human scRNA-seq datasets.
02704_Cross-Database-Analysis-of-Population-Structure
Quantifying Population Structure Consistency in HapMap and 1000 Genomes Project
5UTR_nf
blog
C_learning_note
c++学习笔记
Drug-Target-Interaction-Prediction
Predictive Modelling of Drug Target Interaction: CNN/MPNN/Transformer
DrugGPT
Drug Guidance and Personalized Treatment
igemiracle's Repositories
igemiracle/02620_final_Automated-Cell-Phenotyping
Evaluate classic ML models (Kmeans, SVM, Logistic regression and XGboost) on three different human scRNA-seq datasets.
igemiracle/Drug-Target-Interaction-Prediction
Predictive Modelling of Drug Target Interaction: CNN/MPNN/Transformer
igemiracle/DrugGPT
Drug Guidance and Personalized Treatment
igemiracle/02704_Cross-Database-Analysis-of-Population-Structure
Quantifying Population Structure Consistency in HapMap and 1000 Genomes Project
igemiracle/C_learning_note
c++学习笔记
igemiracle/5UTR_nf
igemiracle/blog
igemiracle/bowtie2
A fast and sensitive gapped read aligner
igemiracle/humann
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
igemiracle/igemiracle.github.io
igemiracle/kneaddata
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
igemiracle/mag
Assembly and binning of metagenomes
igemiracle/MUFFIN
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
igemiracle/RecitationDemo
Demo for programming scientist
igemiracle/rna
igemiracle/Viral_Classification_in_Metagenomics
This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
igemiracle/VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data