#Flux Balance Analysis API
Backend code for our FBA-Interface Web App
##Description
University of Toronto iGEM (international Genetically Engineered Machine) is a student association dedicated to the practice of synthetic biology and dissemination of its scientific foundations. The culmination of each year's efforts is a submission to the iGEM conferences as the University of Toronto team
##API References
| Name | Reference | Version |
|---|---|---|
| Python & PIP | https://docs.python.org/3/ | 3.4 |
| CobraPy | https://cobrapy.readthedocs.org/en/latest/ | |
| Scipy Stack | http://www.scipy.org/install.html | |
| VirtualEnv | https://virtualenv.pypa.io/en/latest/installation.html | 1.9 |
| LibSBML | http://sbml.org/Software/libSBML | 5.11.4 |
##Installation Ubuntu 14.04 or greater is assumed for these installation guides. Python 3.x is assumed for all instances of Python. Python 2.6 or 2.7 is specifically required for Node installation.
System Wide:
$ sudo apt-get update
$ sudo apt-get install python3-pip python3-dev libglpk-dev gfortran
$ sudo pip-3.2 install virtualenv
$ curl https://nodejs.org/dist/v0.12.6/node-v0.12.6.tar.gz | tar node-v0.12.6.tar.gz
$ cd node-v0.12.6.tar.gz
$ ./configure && make && sudo make installSciypy & Numpy Stack:
$ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-noseCobrapy:
$ sudo pip install python-libsbml-experimental
$ sudo pip install cobraActual App
$ git clone https://github.com/igemuoftATG/fba-api
$ cd fba-api
$ npm install##License MIT License