/igsr_archive

Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive

Primary LanguagePythonApache License 2.0Apache-2.0

igsr_archive

Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/

Basic functionality that this repo provides is:

  • adding files on the FTP
  • moving files on the FTP
  • dearchiving files from the FTP
  • updating records in the FTP
  • Recording FTP changes in our tracking database

Installation

  • Use pip for installing:

    pip install igsr-archive

And you are ready to go!

Documentation

Go to https://igsr-archive.readthedocs.io/en/latest/

Indexing scripts

The docs on how to generate the different index files we use in our project can be found here