A repository for collaborative multi-omics data analysis and the covid-omics.app.
Note that the most recent version of the relational SQLite database is available for download via ftp from MassIVE - accession number MSV000085703 under the "updates" directory. For instance, the most current version is listed under: MSV000085703/updates/2020-09-09_lmuehlbauer_4248b39f/other/Covid-19 Study DB.sqlite For more information on data processing, analysis, and availability, please see the open access manuscript.
├── README.md
├── eda
│ ├── BJA
│ ├── EAT
│ ├── IJM
│ ├── JGM
│ ├── KAO
│ ├── MNB
│ └── VL
├── reference
│ ├── color_palette.txt
│ ├── data_dictionary.txt
│ └── db_schema.png
└── src
├── README.md
├── dash
├── README.md
├── app.py
├── apps
│ ├── clustergrammer.py
│ ├── differential_expression.py
│ ├── linear_regression.py
│ └── pca.py
├── assets
│ └── favicon.ico
├── change_log.md
├── data.py
├── index.py
├── nav.py
├── plot.py
└── requirements.txt
├── db_queries
├── db_queries.R
└── db_queries.py