ijustwanthaveaname

ijustwanthaveaname's Stars

• saorisakaue/GREP

  GREP: Genome for REPositioning drugs

  Language:Python3211

• gusevlab/fusion_twas

  methods for functional summary-based imputation

  Language:R7545

• phenoscanner/phenoscanner

  phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R

  Language:R4613

• lukejoconnor/LCV

  Software implementing the Latent Causal Variable Model

  Language:MATLAB6117

• Williamreay/Retinol_GWAS_code

  Scripts for the Reay et al. GWAS of circulating retinol

  Language:R82

• bjfupoplar/PlantPseudo

  Language:C115

• HaobinZhou/Get_MR

  A package for running MR In batches and in parallel quickly

  Language:R28427

• Kukuster/SumStatsRehab

  GWAS summary statistics files QC tool

  Language:Python346

• linjf15/MR_tricks

  Language:R19037

• Cloufield/gwaslab

  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

  Language:Python15825

• opentargets/genetics-sumstat-harmoniser

  Harmonise GWAS summary statistics against a reference VCF

  Language:Python406

• EBISPOT/gwas-sumstats-harmoniser

  GWAS Summary Statistics Data Harmonisation

  Language:Python1913

• perslab/CELLECT

  CELLECT (CELL-type Expression-specific integration for Complex Traits)

  Language:Python7019

• bulik/ldsc

  LD Score Regression (LDSC)

  Language:Python649344

• zhenin/HDL

  High-definition likelihood inference of genetic correlations (HDL)

  Language:R9628

• gero-science/mice_dfi

  Language:Jupyter Notebook51

• satoshi-yoshiji/TwoStepMR_Obesity_COVID

  Codes for our NPNT paper at Nature Metabolism

  Language:R143

• zpliu/MRCI

  Language:R63

• MRCIEU/MRInstruments

  Data objects for various sets of instruments

  Language:R4319

• MRCIEU/TwoSampleMR

  R package for performing 2-sample MR using MR-Base database

  Language:R436177

• GuipengLi/SharePathway

  a python package for KEGG pathway enrichment analysis with multiple gene lists.

  Language:Python3515

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python758186

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python782210

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python58763

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k622

• PheWAS/PheWAS

  The PheWAS R package

  Language:R12956

• GRONINGEN-MICROBIOME-CENTRE/Groningen-Microbiome

  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

  Language:HTML5245

• xia-lab/MicrobiomeAnalystR

  A companion R package for the MicrobiomeAnalyst web server

  Language:R11731

• tidymass/tidymass

  tidymass

  Language:HTML5314

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Python713268