Accompanying git repository with code and data used in the article "World Health Organization (WHO) COVID-19 database: WHO needs it?" by Kodvanj I, Homolak J, Virag D, Trkulja V.
ggplot2
dplyr
ggsci
stringr
devEMF
pubmedR
VennDiagram
bibliometrix
naniar
User has to provide API key to run pmApiRequest() function in R script. API key can be obtained on PubMed.
All raw data is contined in the data folder.
Data retrieved from PubMed with pubmedR (2020-06-26):
* pubmed_at_26062020.RDS
Data exported from Scopus (2020-06-27):
* scopus_top2000.bib
* scopus_bottom2000.bib
WHO database (2020-06-26):
* WHOdb.RDS
Search results on specific topic (PubMed database, 2020-06-26):
* Azithromycin.RDS
* Chloroquine.RDS
* Depression.RDS
* Diabetes.RDS
* Hypertension.RDS
* Quarantine.RDS
* Shock.RDS
* Tocilizumab.RDS
Search results on specific topic (Scopus database, 2020-06-26):
* s_azithromycin.csv
* s_chloroquine.csv
* s_depression.csv
* s_diabetes.csv
* s_hypertension.csv
* s_quarantine.csv
* s_shock.csv
* s_tocilizumab.csv
Search results on specific topic (WHO database, 2020-06-26):
* w_azithromycin.csv
* w_chloroquine.csv
* w_depression.csv
* w_diabetes.csv
* w_hypertension.csv
* w_quarantine.csv
* w_shock.csv
* w_tocilizumab.csv
Older version of WHO database (2020-05-19):
* CSV as at 19 May 2020-Full database.xlsx
WHO - final db - duplicated based on URL.xlsx, in the Results folder, contains duplicate entries from the WHO database.