ilastik-feature-selection dependency missing somewhere
svenpeter42 opened this issue · 2 comments
svenpeter42 commented
(miniconda) speter@speter-laptop ~
% conda create --name ilastik-ff-test ilastik-everything-but-tracking
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /home/speter/miniconda2/envs/ilastik-ff-test:
The following packages will be downloaded:
package | build
---------------------------|-----------------
faulthandler-2.4 | py27_0 32 KB
ilastik-meta-1.2.0rc7 | 0_g16aaa7c 7.4 MB ilastik
six-1.10.0 | py27_0 16 KB
iiboost-0.2.post2 |27_0_76140cd985ab301749395bb47cbc8f8d88cdd257 277 KB ilastik
scipy-0.18.0 | np111py27_0 31.0 MB
tifffile-0.4.1 |np111py27_2_g05b51f3 107 KB ilastik
ilastiktools-0.2 |np111py27_0_g731565e 116 KB ilastik
qimage2ndarray-1.4 | np111py27_5 20 KB ilastik
ilastik-deps-pc-headless-1.1| py27_4 902 B ilastik
ilastik-deps-pc-1.1 | py27_3 894 B ilastik
ilastik-deps-carving-1.1.6a7| 1 605 B ilastik
ilastik-deps-pc-iiboost-1.1| 1 588 B ilastik
ilastik-everything-but-tracking-1.2.0rc3| 0 1 KB ilastik
------------------------------------------------------------
Total: 39.0 MB
The following NEW packages will be INSTALLED:
boost: 1.55.0-5 ilastik
cairo: 1.12.18-6
cycler: 0.10.0-py27_0
decorator: 4.0.10-py27_0
faulthandler: 2.4-py27_0
fftw: 3.3.4-1 ilastik
fontconfig: 2.11.1-6
freetype: 2.5.5-1
functools32: 3.2.3.2-py27_0
futures: 3.0.5-py27_0
greenlet: 0.4.10-py27_0
h5py: 2.6.0-np111py27_1
hdf5: 1.8.16-0
iiboost: 0.2.post2-27_0_76140cd985ab301749395bb47cbc8f8d88cdd257 ilastik
ilastik-deps-carving: 1.1.6a7-1 ilastik
ilastik-deps-pc: 1.1-py27_3 ilastik
ilastik-deps-pc-headless: 1.1-py27_4 ilastik
ilastik-deps-pc-iiboost: 1.1-1 ilastik
ilastik-everything-but-tracking: 1.2.0rc3-0 ilastik
ilastik-launch: 0.1-4 ilastik
ilastik-meta: 1.2.0rc7-0_g16aaa7c ilastik
ilastiktools: 0.2-np111py27_0_g731565e ilastik
itk-seg-conv-only: 4.6.1-4 ilastik
jbig: 2.1-0 ilastik
jpeg: 8d-1
jsonschema: 2.5.1-py27_0
libgcc: 4.8.5-1
libgfortran: 3.0.0-1
libpng: 1.6.17-0
libtiff: 4.0.6-1 ilastik
libxml2: 2.9.2-0
matplotlib: 1.5.1-np111py27_0
mkl: 11.3.3-0
networkx: 1.11-py27_0
nose: 1.3.7-py27_1
numpy: 1.11.1-py27_0
openssl: 1.0.2h-1
pillow: 3.3.0-py27_0
pip: 8.1.2-py27_0
pixman: 0.32.6-0
psutil: 4.3.0-py27_0
pycairo: 1.10.0-py27_0
pyparsing: 2.1.4-py27_0
pyqt: 4.11.3-py27_1
python: 2.7.12-1
python-dateutil: 2.5.3-py27_0
pytz: 2016.6.1-py27_0
qimage2ndarray: 1.4-np111py27_5 ilastik
qt: 4.8.6-3
readline: 6.2-2
scikit-image: 0.12.3-np111py27_1
scikit-learn: 0.17.1-np111py27_2
scipy: 0.18.0-np111py27_0
setuptools: 23.0.0-py27_0
sip: 4.16.5-py27_0
six: 1.10.0-py27_0
sqlite: 3.13.0-0
tifffile: 0.4.1-np111py27_2_g05b51f3 ilastik
tk: 8.5.18-0
vigra: 1.11.0.post36-np111py27_1_g6fcc71f ilastik
vtk: 5.10.1.99-with_pyqt_6 ilastik
wheel: 0.29.0-py27_0
xz: 5.2.2-0
yapsy: 1.10.423-py27_0 ilastik
zlib: 1.2.8-3
Proceed ([y]/n)?
then inside the new env:
(ilastik-ff-test) speter@speter-laptop ~/miniconda2/envs/ilastik-ff-test
% ./run_ilastik.sh
Warning: Ignoring your non-empty QT_PLUGIN_PATH
Starting ilastik from "/home/speter/miniconda2/envs/ilastik-ff-test".
ERROR 2016-07-28 14:20:10,772 excepthooks 30125 139639445841664 Unhandled exception in thread: 'MainThread'
ERROR 2016-07-28 14:20:10,773 excepthooks 30125 139639445841664 Traceback (most recent call last):
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/shell/gui/startShellGui.py", line 91, in launchShell
from ilastik.shell.gui.ilastikShell import IlastikShell
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/shell/gui/ilastikShell.py", line 81, in <module>
import ilastik.workflows
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/workflows/__init__.py", line 28, in <module>
import pixelClassification
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/workflows/pixelClassification/__init__.py", line 21, in <module>
from pixelClassificationWorkflow import PixelClassificationWorkflow
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/workflows/pixelClassification/pixelClassificationWorkflow.py", line 34, in <module>
from ilastik.applets.pixelClassification import PixelClassificationApplet, PixelClassificationDataExportApplet
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/applets/pixelClassification/__init__.py", line 21, in <module>
from pixelClassificationApplet import *
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/applets/pixelClassification/pixelClassificationApplet.py", line 22, in <module>
from opPixelClassification import OpPixelClassification
File "/home/speter/miniconda2/envs/ilastik-ff-test/ilastik-meta/ilastik/ilastik/applets/pixelClassification/opPixelClassification.py", line 36, in <module>
import ilastik_feature_selection
ImportError: No module named ilastik_feature_selection
which can be fixed with
% conda install ilastik-feature-selection
m-albert commented
Or
conda install --channel https://conda.anaconda.org/ilastik ilastik-feature-selection
stuarteberg commented
Thanks for the reports, guys. One of our packages on anaconda.org was out-of-date. It's fixed now.