Pinned Repositories
codger
Toolkit for manipulating explicit codon alignments with frameshifts
dvorfs
Tool for mining endogenous viral elements from eukaryotic genomes.
snakestart
Set up a basic conda env with snakemake and a sensible directory structure
venn
Bash wrapper for simple set operations using sort and uniq
zotero-tiddly
hacks to get zotero and Tiddlywiki working together
bio-labware-review
cloudos
cloudos: An R package for the Lifebit CloudOS Platform
cloudos-cli
Python library and Command Line Interface for interacting with Lifebit Applications
ilevantis's Repositories
ilevantis/zotero-tiddly
hacks to get zotero and Tiddlywiki working together
ilevantis/dvorfs
Tool for mining endogenous viral elements from eukaryotic genomes.
ilevantis/snakestart
Set up a basic conda env with snakemake and a sensible directory structure
ilevantis/venn
Bash wrapper for simple set operations using sort and uniq
ilevantis/getseq
CLI script to fetch sequences from a multifasta file
ilevantis/codger
Toolkit for manipulating explicit codon alignments with frameshifts
ilevantis/bio-labware
ilevantis/fishconf
ilevantis/genomeview
An extensible python-based genomics visualization engine
ilevantis/logomaker
Software for the visualization of sequence-function relationships
ilevantis/qm_snakestart
Initialise a snakemake project to be run on the QMUL cluster
ilevantis/ReannTE
Scripts to help transposable elements consensus sequences curation
ilevantis/YAAP
Yet Another Amplicon denoising Pipeline, is a pipeline to analyse metabarcoding amplicon data. It performs QC, adapter removal, denoising and ZOTU table construction