Pinned Repositories
auto-tx
Official GitHub mirror of the AutoTx intelligent background transfer service.
hrm-omero
The HRM-OMERO connector
imcf-fiji-scripts
:wrench: :memo: :coffee: :microscope: Scripts for Fiji provided by the Imaging Core Facility, Biozentrum, University of Basel
imcf-fiji-toolbars
:coffee: :microscope: :symbols: Fiji Action Bars provided by the IMCF.
lxc-scripts
:truck: :construction: Scripts and stuff to automatically create LXC containers in various flavours.
pyppms
:bookmark_tabs: :clock10: :snake: A Python package to communicate with Stratocore's PUMAPI.
python-imcflibs
🐍 ☕ 🔩 🔧 🪛 A collection of commonly used Python helper functions.
read_roi
Easy read ImageJ / Fiji ROI binaries in Python
rlm-prometheus
Prometheus exporter providing metrics from a Reprise License Manager (RLM) instance.
snijder
:scissors: Single Node Inhomogeneous Job Dispatcher, Executor & Reporter
IMCF's Repositories
imcf/auto-tx
Official GitHub mirror of the AutoTx intelligent background transfer service.
imcf/lxc-scripts
:truck: :construction: Scripts and stuff to automatically create LXC containers in various flavours.
imcf/rlm-prometheus
Prometheus exporter providing metrics from a Reprise License Manager (RLM) instance.
imcf/pyppms
:bookmark_tabs: :clock10: :snake: A Python package to communicate with Stratocore's PUMAPI.
imcf/imcf-fiji-scripts
:wrench: :memo: :coffee: :microscope: Scripts for Fiji provided by the Imaging Core Facility, Biozentrum, University of Basel
imcf/python-micrometa
:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
imcf/jython-scijava-logging
:snake::coffee::bookmark_tabs: Jython package for using SciJava's LogService for logging.
imcf/python-imcflibs
🐍 ☕ 🔩 🔧 🪛 A collection of commonly used Python helper functions.
imcf/ArgoLight_analysis_tool
Code to control the quality of images taken with our microscopes
imcf/Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
imcf/citrix-virtual-apps-desktops-sdk
imcf/hrm
The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.
imcf/I2K_ST_data_analysis
imcf/ijl-utilities-wrappers
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
imcf/imcf-fiji-mocks
Python mocks 🧌 providing dummy imports e.g. for testing the IMCF Fiji Python packages.
imcf/imcf-iap-template
imcf/imcf.github.io
IMCF github pages
imcf/ipmitool-prometheus-textfile
Wrapper for the "ipmitool" Prometheus textfile collector.
imcf/logging-interceptor
Code to integrate Loguru with Python's standard logging module
imcf/omero-common
Gradle project containing common utilities for OMERO
imcf/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
imcf/omero-prometheus-tools
Utilities for monitoring OMERO with Prometheus
imcf/omero-py
Python project containing Ice remoting code for OMERO
imcf/omero-scripts
Extracted OmeroPy/scripts directory for local modifications.
imcf/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
imcf/psytricks
PowerShell-Python-Citrix vodoo. :alien: :dizzy_face:
imcf/vizgen-postprocessing
imcf/vpt-core
Core components of the Vizgen Post-processing Tool
imcf/vpt-plugin-cellpose
Cellpose plugin for the Vizgen Post-processing Tool
imcf/vpt-plugin-cellpose2