Getting problem when I type "./download_dbs.sh"
Opened this issue · 2 comments
ThomasYang0615 commented
Hello,
I have problem at the final step of installing megSAP : ./download_dbs.sh
When I execute '''download_dbs.sh''' :
- I can't Install CancerHotspots.org, the address of row 25 seems broken
- I can't Install ClinVar, there will be ERROR:
- Error in get_ref_seq : Failed to open the file /tmp/local_ngs_data//GRCh38.fa
- [faidx] Could not build fai index /tmp/local_ngs_data//GRCh38.fa.fai
I did try to find out the solution, but I stuck.
Can you give me a hand?
noob9721 commented
Hello,
Did you get a solution for this by any chance? I have the same problem.
marc-sturm commented
Which version of megSAP are u using?
2023_11 or the master?
CancerHotspots:
the URL should work when using the master
Clinvar:
please use the latest master, I just comitted a fix, see 3e253cc
Does it work with the master?