Pinned Repositories
GitHub_resources
Resources and training on how to use Git and GitHub
immunomethylomics.github.io
Public facing website for the Immunomethylomics working group
methyLiftover
A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
FlowSorted.BloodExtended.EPIC
A new extended cell deconvolution for peripheral blood
FlowSorted.Blood.EPIC
This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC
preprocessing
For use for the group
IDOL
IDentifying Optimal DNA methylation Libraries (IDOL)
Analysis_FlowSorted.Blood.EPIC
This repository contains all the code used for the analysis in Salas et al. 2018 Genome Biology
FlowSorted.CordBloodCombined.450k
This package includes a combination of four cell references for umbilical cord blood deconvolution using IlluminaHumanMethylation arrays 450K and EPIC
Analysis-UBC-references
Integrating and improving UBC deconvolution
Immunomethylomics Working Group's Repositories
immunomethylomics/FlowSorted.BloodExtended.EPIC
A new extended cell deconvolution for peripheral blood
immunomethylomics/FlowSorted.Blood.EPIC
This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC
immunomethylomics/FlowSorted.CordBloodCombined.450k
This package includes a combination of four cell references for umbilical cord blood deconvolution using IlluminaHumanMethylation arrays 450K and EPIC
immunomethylomics/analysis_FlowSorted.BloodExtended.EPIC
Code for the analysis included in the manuscript. Data is available on GEO.
immunomethylomics/IDOL
IDentifying Optimal DNA methylation Libraries (IDOL)
immunomethylomics/OxyBSpar
Optimized analysis of 5hmC using OxyBS
immunomethylomics/preprocessing
For use for the group
immunomethylomics/Analysis-UBC-references
Integrating and improving UBC deconvolution
immunomethylomics/Analysis_FlowSorted.Blood.EPIC
This repository contains all the code used for the analysis in Salas et al. 2018 Genome Biology
immunomethylomics/immunomethylomics.github.io
Public facing website for the Immunomethylomics working group
immunomethylomics/GitHub_resources
Resources and training on how to use Git and GitHub
immunomethylomics/methyLiftover
A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set