Pinned Repositories
data-management-python
Python library for running data analysis pipelines for IGF team
igf-airflow-hpc
Airflow dags and scripts for HPC
igf-analysis
A repository for storing analysis scripts
igf-dockerfiles
A list of dockerfiles for Docker and singularity image building
igf-pipeline-help
A repository for keeping help documentation of IGF pipelines
igf-pipelines
A repository of pipelines and scripts for Imperial BRC Genomics Facility team
IGFPortal
scanpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scanpy
scirpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scirpy
seurat-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using Seurat
Imperial BRC Genomics Facility's Repositories
imperial-genomics-facility/scanpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scanpy
imperial-genomics-facility/data-management-python
Python library for running data analysis pipelines for IGF team
imperial-genomics-facility/igf-airflow-hpc
Airflow dags and scripts for HPC
imperial-genomics-facility/igf-pipeline-help
A repository for keeping help documentation of IGF pipelines
imperial-genomics-facility/igf-pipelines
A repository of pipelines and scripts for Imperial BRC Genomics Facility team
imperial-genomics-facility/igf-analysis
A repository for storing analysis scripts
imperial-genomics-facility/IGF-aws-terraform
A repository for storing terraform configs
imperial-genomics-facility/igf-dockerfiles
A list of dockerfiles for Docker and singularity image building
imperial-genomics-facility/IGFPortal
imperial-genomics-facility/imperial-genomics-facility.github.io
Imperial Genomics Facility Git Hub Pages
imperial-genomics-facility/Metadata_validation_docker
A docker file for metadata validation server
imperial-genomics-facility/scirpy-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using scirpy
imperial-genomics-facility/seurat-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using Seurat
imperial-genomics-facility/base-notebook-image
A repository for keeping conda env and docker files for the base notebook container image
imperial-genomics-facility/demultiplexing_report
A repository for storing codes for de-multiplexing report generaltion
imperial-genomics-facility/hail-notebook-image
A repository for keeping conda env and docker image file for running single cell analysis using Hail.is
imperial-genomics-facility/igf-airflow-scripts
A repository for keeping scripts for running Apache Airflow based pipeline for IGF
imperial-genomics-facility/igf-basespace
A repository for keeping Illumina Basespace specific codes for IGF team
imperial-genomics-facility/igftools-kube-deploy
IGFtools server deployment using Kubernetes
imperial-genomics-facility/IlluminaDemultiplexingReportSpark
A repository for generating de-multiplexing report for Illumina sequencing runs using Pyspark
imperial-genomics-facility/internal-dashboard
imperial-genomics-facility/interop-notebook-image
A repository for keeping notebooks for Interop data processing
imperial-genomics-facility/LimsMetadataParsing
A pyspark based codebase for fetching and formatting metadata from a LIMS db for IGF
imperial-genomics-facility/Metadata_validation
A flask based metadata validation server
imperial-genomics-facility/pipeline_tutorial_notebooks
Jupyter notebook based tutorial for Nextflow
imperial-genomics-facility/rnaseq-notebook-image
A repository for keeping conda env and docker image file for running RNA-Seq analysis
imperial-genomics-facility/sample_tracking_database
A database for tracking sample information in the lab
imperial-genomics-facility/singlecell-notebooks-image
A repository for storing conda env and docker image file for running single cell analysis
imperial-genomics-facility/spark-notebook-image
A repository for running Apache Spark via Jupyter notebook
imperial-genomics-facility/viral-genome-notebook-image
A repo for keeping notebooks for viral genome analysis and data visualization