Maintainer: Ian Rambo :: ian.rambo@utexas.edu The helper script extract_covfile.sh can be used to extract coverage information from a single genome from a JGI-type depthfile. The batch_generate_covfiles.sh script is used to extract coverage profiles from multiple genomes based on CheckM completeness and contamination thresholds.
imrambo/mmgenome2_workflow
Scripts for metagenome assembled genome postprocessing and cleaning with MMGenome2
Shell