Missing var names in cscGAN

[ubioinformat]

Hi!

After running the cscGAN I have noticed that the outputted generated cells have no gene names. As some genes were dropped in the preprocessing there is a length mismatch among the input and output genes, is there a way to know which genes have been dropped?

Maybe here the gene names can be added as .var_names?

Thanks in advance!

Jesús.

[RaphaelTEBOUL]

Hi,

You actually have access to the proper gene names if you have a look at the ./experiments/YOUR_EXPERIMENT/YOUR_EXPERIMENT.h5ad created !

Best,

Raphaël

[fhausmann]

Dear @ubioinformat,
Sorry for the late reply.
Did the information from @RaphaelTEBOUL, fixed your issue?
If not, I'll have a look into it.

Best,
Fabian

[ubioinformat]

Yes it worked!

Sorry for the late reply. Thank you all!