Dockerfile needed modification to build

[AJnsm]

After copying the requirements.txt file into the dockerfile directory, I ran

docker build -t scgan_container ./dockerfile

Expected behaviour: container image gets built.

Observed behaviour:
Got the error
CMake Error: Unknown argument --

And no container gets built.

The readme mentions that it needs cmake 3.18.2. I changed line 13 of the Dockerfile to:

RUN pip3 install cmake==3.18.2 && \

and now the container gets built.

[AJnsm]

Ok this builds the container, but with python3.5. You can add python3.6, which is listed as a requirement, with

RUN add-apt-repository ppa:deadsnakes/ppa
RUN apt-get update \
  && apt-get -y --no-install-recommends install ssh python3.6-tk python3-pip  libxml2-dev libhdf5-dev llvm \
  && pip3 install --upgrade 'pip<21' setuptools wheel

But this still installs the dependencies only for python3.5. Any suggestions?

[fhausmann]

Hello,
scGAN should work with Python 3.5 as well, so there should be no need for installing python 3.6.
I hope that solves the issue after you fixed the cmake issue.
However, I'll have a look into it and will provide a working dockerfile soon.

Best,
Fabian