This is a multiobjective similarity search algorithm based on the nondominated sorting genetic algorithm (NSGA-II).
Examples are available in the examples folder.
Documentation is available in the doc folder.
- n sets of RNA sequences
- candidate structures for each of them
- m distance functions (at least 2, but too much will make results crappy)
- s sets of n structures (s>=1) that are non-dominated according to distance functions.
- distance functions must be symmetric
- output is not deterministic
- all the limitations of NSGA-II
Gabriel C-Parent did most of the software and design.
Stefanie Schirmer extracted test data and helped with validation and documentation.
All software is distributed under MIT licence.
Succint description in this supplementary material.