Pinned Repositories
alfred-similar-image-search
Google Image searches based on local files via Alfred
Alternative-Splicing-Tools
A list of alternative splicing analysis resources
Automatic-Youtube-Reddit-Text-To-Speech-Video-Generator-and-Uploader
A series of 3 programs that will automatically receive scripts from Reddit, allow the user to edit them, then be sent off to a video generator where they will be uploaded to YouTube automatically.
awesome-nextflow
A curated list of nextflow based pipelines
BIOF076-Visualization-with-R
Course website for BIOF076
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
bonito
Convolution Basecaller for Oxford Nanopore Reads
indigoblueraspberry's Repositories
indigoblueraspberry/alfred-similar-image-search
Google Image searches based on local files via Alfred
indigoblueraspberry/Alternative-Splicing-Tools
A list of alternative splicing analysis resources
indigoblueraspberry/Automatic-Youtube-Reddit-Text-To-Speech-Video-Generator-and-Uploader
A series of 3 programs that will automatically receive scripts from Reddit, allow the user to edit them, then be sent off to a video generator where they will be uploaded to YouTube automatically.
indigoblueraspberry/awesome-nextflow
A curated list of nextflow based pipelines
indigoblueraspberry/BIOF076-Visualization-with-R
Course website for BIOF076
indigoblueraspberry/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
indigoblueraspberry/bonito
Convolution Basecaller for Oxford Nanopore Reads
indigoblueraspberry/caltha
A python package to process UMI tagged mixed amplicon metabarcoding data.
indigoblueraspberry/Capslock
Make Capslock Great Again!
indigoblueraspberry/CyclomicsManuscript
Data analysis scripts used to process and plot the data for the manuscript of CyclomicsSeq.
indigoblueraspberry/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
indigoblueraspberry/history-sync
An oh-my-zsh plugin for GPG encrypted internet synchronised Zsh history, with Git.
indigoblueraspberry/MFP
Mollecular Functional Portraits
indigoblueraspberry/miryoku_zmk
Miryoku is an ergonomic, minimal, orthogonal, and universal keyboard layout. Miryoku ZMK is the Miryoku implementation for ZMK.
indigoblueraspberry/MuSTA
MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing
indigoblueraspberry/ONT_RNAseq_project
indigoblueraspberry/RCK-1
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
indigoblueraspberry/rerio
Research release basecalling models and configurations
indigoblueraspberry/RNA-seq
indigoblueraspberry/shared_frameshift_neoantigen
indigoblueraspberry/sRNAtoolbox
small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image
indigoblueraspberry/SVExpress
SVExpress is a suite of computational tools (implemented in Excel VBA and R) that allows one to identify Structural Variant (SV) breakpoint-to-expression associations across a set of cancer samples profiled for both SVs and gene transcription.
indigoblueraspberry/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
indigoblueraspberry/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
indigoblueraspberry/vim-adventures-rev
A reverse engineered Node.js version of the Vim Adventures game.
indigoblueraspberry/zmk
ZMK Firmware Repository
indigoblueraspberry/zmk-config-ben
indigoblueraspberry/zmk-config-crkbd
A zmk config for the crkbd keyboard. Written for xcmkb user to edit keymap without complicated zmk setup.
indigoblueraspberry/zujun.github.io
indigoblueraspberry/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs