Pinned Repositories
Approaching-Any-ML-Problem
Notebooks from Approaching (Almost) Any Machine Learning Problem - Abhishek Thakur
Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
bioinformaticsalgorithm
Code for UCSD Bioinformatics Coursera
intro-to-ml-assignments-mit
This repo contains google colab notebooks for the homework exercises from Leslie Kabling's 'Intro to Machine Learning' course.
Metabolomics
Contains examples of workflow for Metabolomics analysis
Microbiome
Different notebooks containing analysis of Microbiome data
Modern-Statistics-for-Modern-Biology
Contains solutions for exercises from the book Modern Statistics for Modern Biology (Susan Holmes & Wolfgang Huber)
nf-mgx-short
Nextflow Pipeline to Run Taxonomic Classifier, Functional Annotation and Resistome Analysis for Short Shotgun Metagenomics Reads
scRNA-seq
Contains various notebooks & scripts involved in scRNA-seq analysis
indrikwijaya's Repositories
indrikwijaya/Modern-Statistics-for-Modern-Biology
Contains solutions for exercises from the book Modern Statistics for Modern Biology (Susan Holmes & Wolfgang Huber)
indrikwijaya/scRNA-seq
Contains various notebooks & scripts involved in scRNA-seq analysis
indrikwijaya/intro-to-ml-assignments-mit
This repo contains google colab notebooks for the homework exercises from Leslie Kabling's 'Intro to Machine Learning' course.
indrikwijaya/Metabolomics
Contains examples of workflow for Metabolomics analysis
indrikwijaya/Microbiome
Different notebooks containing analysis of Microbiome data
indrikwijaya/nf-mgx-short
Nextflow Pipeline to Run Taxonomic Classifier, Functional Annotation and Resistome Analysis for Short Shotgun Metagenomics Reads
indrikwijaya/Approaching-Any-ML-Problem
Notebooks from Approaching (Almost) Any Machine Learning Problem - Abhishek Thakur
indrikwijaya/Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
indrikwijaya/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
indrikwijaya/bioinformaticsalgorithm
Code for UCSD Bioinformatics Coursera
indrikwijaya/Computational-Drug-Discovery
Contains various methods and examples for Computational Drug Discovery
indrikwijaya/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
indrikwijaya/DeepLearning-for-LifeScience
Contains various implementations of different Deep Learning Algorithms for Life Science problems
indrikwijaya/Epigenomics
Different possible analysis for Epigenomics data
indrikwijaya/FYP-ML-For-Genomics
This repo contains relevant files for my final year project in NUS (2018).
indrikwijaya/indrikwijaya
Config files for my GitHub profile.
indrikwijaya/indrikwijaya.github.io
Minimal portfolio for DS projects
indrikwijaya/machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
indrikwijaya/MCB112-Biological-Data-Analysis
Contains lecture notes, sectional materials and exercises from Prof Sean Eddy's course
indrikwijaya/ml-coursera-python-assignments
Andrew Ng's Machine Learning Coursera Assignments
indrikwijaya/Multi-omics
Contains different tools used for Multi-omics integration and analysis
indrikwijaya/Notebook-examples
This repo contains different notebooks from the book 'Hands-On Machine Learning with Scikit-Learn & TensorFlow'
indrikwijaya/Old-RNAseq
Scripts to run end-to-end RNAseq pipeline (from fastq to RPKM files)
indrikwijaya/p4l_go
Contains materials for 'Programming for Lovers (P4L)' using GO by Phillip Compeau
indrikwijaya/Proteomics
Contains an example of workflow for Proteomics analysis
indrikwijaya/RNA-seq
Contains example steps to run RNAseq analysis
indrikwijaya/tidytuesday
indrikwijaya/utility
Computational biology utility scripts