Pinned Repositories
MappedTensor
Better memory-mapped files in Matlab
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
DeepLabCut
Markerless tracking of user-defined features with deep learning
FaceMap
matlab GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
gerardus
Computational biology and medical image processing scripts and programs
Gogo-stages
Go^2-stages : Head-fixation stages for longitudinal in vivo two photon-imaging with submicron accuracy
Linelength-spike-detector-MATLAB
Detects abnormal events in brain wave data (namely, interictal spikes in EEG data) using a linelength transform algorithm.
StackGPS
StackGPS: 3D registration on-the-fly for longitudinal two photon imaging with submicron precision
gerardus
Computational biology and medical image processing scripts and programs
ingiehong's Repositories
ingiehong/Gogo-stages
Go^2-stages : Head-fixation stages for longitudinal in vivo two photon-imaging with submicron accuracy
ingiehong/StackGPS
StackGPS: 3D registration on-the-fly for longitudinal two photon imaging with submicron precision
ingiehong/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
ingiehong/DeepLabCut
Markerless tracking of user-defined features with deep learning
ingiehong/FaceMap
matlab GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
ingiehong/gerardus
Computational biology and medical image processing scripts and programs
ingiehong/Linelength-spike-detector-MATLAB
Detects abnormal events in brain wave data (namely, interictal spikes in EEG data) using a linelength transform algorithm.
ingiehong/NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
ingiehong/retinotopy
Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.
ingiehong/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
ingiehong/stringtie
Transcript assembly and quantification for RNA-Seq
ingiehong/vhlab_mltbx_toolbox
General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators