Pinned Repositories
automate-decombinator
Scripts for automating the Decombinator analysis pipeline
decombinator
Decombinator v5: fast, error-correcting analysis of TCR repertoires
Decombinator_v2
Fast, efficient tool for analysis of T cell receptor repertoires
Dynamic-LPBoost-for-TCR-Classification
Exclusive-Group-Lasso
Solve exclusive group Lasso
ExpandedBenchmark
LeoTask
A lightweight parallel task running and results aggregation (MapReduce) framework
LeoTaskApp
Applications based on the LeoTask framework http://github.com/mleoking/LeoTask.
Single-Tag-Decombinator
Modified Version of Decombinator to Allow Single Tag Search for Short Read Data
TCR-Cancer-Prediction
Rudy Yuen's MSc project 2024
innate2adaptive's Repositories
innate2adaptive/decombinator
Decombinator v5: fast, error-correcting analysis of TCR repertoires
innate2adaptive/ExpandedBenchmark
innate2adaptive/Decombinator_v2
Fast, efficient tool for analysis of T cell receptor repertoires
innate2adaptive/LeoTask
A lightweight parallel task running and results aggregation (MapReduce) framework
innate2adaptive/LeoTaskApp
Applications based on the LeoTask framework http://github.com/mleoking/LeoTask.
innate2adaptive/Single-Tag-Decombinator
Modified Version of Decombinator to Allow Single Tag Search for Short Read Data
innate2adaptive/agilp
Bioconductor package for anlaysing array data
innate2adaptive/automate-decombinator
Scripts for automating the Decombinator analysis pipeline
innate2adaptive/CovidsortiumTCRExpanded
Scripts that produce data and figures for the COVIDsortium TCR paper (Aug 2022)
innate2adaptive/Decombinator-Tools
Useful scripts for working with Decombinator
innate2adaptive/Dynamic-LPBoost-for-TCR-Classification
innate2adaptive/Dynamic-Programming-LPBoost
Dynamic Programming LPBoost over String Kernel for TCR Classification
innate2adaptive/Exclusive-Group-Lasso
Solve exclusive group Lasso
innate2adaptive/Modeller-Repair
innate2adaptive/Single-cell-imaging
innate2adaptive/TCR-Cancer-Prediction
Rudy Yuen's MSc project 2024
innate2adaptive/tcRIP
UCL Machine Learning MSc Thesis Code: TCR Classification to CD4 or CD8
innate2adaptive/Bulk-RNAseq-analysis
Repo with scripts used for bulk RNAseq analysis in the Noursadeghi's lab
innate2adaptive/Decombinator-Tags-FASTAs
The tag, FASTA and translate files which Decombinator v3 uses in its analysis of TCR repertoire data
innate2adaptive/Decombinator-Test-Data
Sample TCR FASTQ data for testing the Decombinator pipeline
innate2adaptive/KT2-TCR-sequences
FASTA file sequences of the KT2 T cell receptors
innate2adaptive/tcr-analysis
Scripts and files that I use to analyse T cell receptor repertoire data, produced by deep-sequencing