HuBMAP - Hacking the Human Vasculature (Kaggle Competition)
- kidney under a microscope
- glomerulus: "little ball of yarn"
- distal convoluted tubules: "open centers"
- proximal convoluted tubules: "fluffy centers"
-
training:
- metadata summary csv:
metadata/trn_img_meta_7033.csv - 7033 samples
- 512 x 512 x 3
- data type
uint8 - mean intensity across 3 channels:
- stdev intensity across 3 channels:
- sample image:
- metadata summary csv:
-
test:
- 1 sample
- 512 x 512 x 3
- data type
uint8 - mean 163.5
- std 53.1
- sample image:
- tile:
- location:
metadata/tile_meta_7033.csv - columns:
- id
- source_wsi (patients from where WSIs were extracted)
- 1-4, 6-14
- source_wsi 1-4 described in
wsi_meta
- dataset:
- 422
- 1211
- 5400
- dataset description:
- Annotations that have been expert reviewed.
- Comprises the remaining tiles from these same WSIs and contain sparse annotations that have not been expert reviewed.
- Tiles extracted from an additional nine WSIs. These tiles have not been annotated. You may wish to apply semi- or self-supervised learning techniques on this data to support your predictions.
- i, j: upper-left corner within the WSI where the tile was extracted
- location:
- wsi (whole slide images):
- source_wsi (4 patients: 3 females, 1 male)
- age
- sex
- race
- height (cm)
- weight (kg)
- bmi
- Source:
polygons.jsonl - 1633 unique IDs
- 3 labels:
- blood_vessel
- glomerulus
- unsure
- produced 1633 segmentations masks with name
mask.tif - sample image with segmentation:
